| Name | Flags | Card. | Type |
Description & Constraints
|
|---|---|---|---|---|
Observation
|
Analysis | |||
category
|
||||
text
|
||||
|
code
|
||||
|
subject
|
||||
|
focus
|
||||
effective[x]:effectiveDateTime
|
dateTime | |||
|
method
|
S | 1.. |
Method of analysis Binding: Analysis Technical Protocol ( extensible ) |
|
specimen
|
S | Reference (Biological Sample) | Parent external accession | |
|
device
|
S | 1.. | Reference (Sequencing Device) | Sequencing device used |
Slices for component
|
1 .. | Slice: Unordered, Open by pattern:code | ||
component:algorithmic-cellularity
|
0..1 | Percentage of tumor cells | ||
code
|
Required Pattern: At least the following | |||
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C3260254 |
|
value[x]
|
Quantity | |||
|
component:algorithmic-ploidy
|
0..1 | Ploidy | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C0032246 |
|
|
Slices for value[x]
|
Slice: Unordered, Open by type:$this | |||
value[x]:valueCodeableConcept
|
0..1 | CodeableConcept | Binding: Algorithmic Ploidy ( extensible ) | |
|
component:number-of-breakpoints
|
0..1 | Genomic complexity | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: LA26327-9 |
|
|
value[x]
|
Quantity | |||
|
component:date-of-experiment
|
0..1 | Sequencing date | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 258049002 |
|
value[x]
|
dateTime | |||
|
component:analytic-pipeline-code
|
1..1 | Name of the analysis software | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C0162801 |
|
|
value[x]
|
string | |||
|
Documentation for this format
|
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