| Name | Flags | Card. | Type |
Description & Constraints
|
|---|---|---|---|---|
Observation
|
Variant | |||
strand-bias
|
S | 0..1 | boolean |
DNA strand bias URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/strand-bias |
value[x]
|
||||
subject
|
S | 1.. | Reference (Oncology Patient) | |
|
derivedFrom
|
S | 1..1 | Reference (Sequencing Analysis) | Analysis from which come this observation |
Slices for component
|
8 .. | Slice: Unordered, Open by pattern:code | ||
component:cytogenetic-location
|
S | ..1 | Cytogenetic map | |
value[x]
|
Binding: CytoBand Value Set ( required ) | |||
|
component:ref-sequence-assembly
|
S | 1..1 | Reference genome version | |
|
value[x]
|
Binding: GenomeBuild Value Set ( extensible ) | |||
|
component:dna-chg-type
|
S | 1.. | Type | |
|
value[x]
|
Binding: DNA Change Type Value Set ( extensible ) | |||
|
component:genomic-source-class
|
S | 1.. | Cellular type | |
|
value[x]
|
||||
|
component:allelic-read-depth
|
S | 1..1 | Depth | |
|
value[x]
|
||||
|
component:allelic-state
|
S | Zygotia | ||
|
value[x]
|
||||
|
component:ref-allele
|
S | 1.. | Reference allele | |
|
value[x]
|
||||
|
component:alt-allele
|
S | 1.. | Alternative allele | |
|
value[x]
|
||||
|
component:exact-start-end
|
||||
|
value[x]
|
||||
|
low
|
S | Start position | ||
|
high
|
S | 1.. | End position | |
|
component:pathogenicity
|
S | 0..1 | Pathogenicity | |
code
|
Required Pattern: At least the following | |||
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 74019-1 |
|
value[x]
|
CodeableConcept | Binding: Pathogenicity Value Set ( required ) | ||
|
component:actionability
|
S | 0..1 | Impact on patient treatment | |
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 93348-1 |
|
value[x]
|
boolean | |||
|
component:proposed-for-orientation
|
S | 0..1 | Impact on the choice of therapy | |
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C0449889 |
|
|
value[x]
|
boolean | |||
|
component:chromosome
|
S | 1..* |
Chromosome |
|
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 48000-4 |
|
|
value[x]
|
S | 1.. | CodeableConcept | Binding: Chromosome Value Set ( required ) |
component:variant-read-depth
|
S | 1..1 | Alternative allele depth | |
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: LP232001-0 |
|
|
value[x]
|
S | 1.. | Quantity | |
|
Documentation for this format
|
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