| Name | Flags | Card. | Type |
Description & Constraints
|
|---|---|---|---|---|
Observation
|
Observation | |||
Slices for extension
|
Slice: Unordered, Open by value:url | |||
strandBias
|
S | 0..1 | CodeableConcept |
Type of the expression value corresponding to the level of data processing URL: https://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/gene-expression-data-type Binding: Gene Expression Data Type Value Set ( required ) |
code
|
Required Pattern: At least the following | |||
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C0017262 |
|
subject
|
Reference (Oncology Patient) | |||
Slices for derivedFrom
|
1 .. | Slice: Unordered, Open by pattern:reference | ||
derivedFrom:analysis
|
1..1 | Reference (Sequencing Analysis) | Analysis from which come this observation | |
|
Slices for component
|
1 .. | Slice: Unordered, Open by pattern:code | ||
component:actionability
|
0..1 | Conclusion of the clinicians wether the variant is actionable or not during the Molecular Tumor Board | ||
code
|
Required Pattern: At least the following | |||
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 93348-1 |
|
value[x]
|
boolean | |||
|
component:proposed-for-orientation
|
0..1 | Is the ClinicalTumorBoardConclusion used to orient the treatment decision ? | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://terminology.hl7.org/CodeSystem/umls |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: C0449889 |
|
|
value[x]
|
boolean | |||
|
component:pathogenicity
|
0..1 | Conclusion of the biologist on the pathogenicity of the variant before the Molecular Tumor Board | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 74019-1 |
|
value[x]
|
CodeableConcept | Binding: Pathogenicity Value Set ( required ) | ||
|
component:gene-studied
|
0..* |
Gene studied [ID] |
||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 48018-6 |
|
|
value[x]
|
1.. | CodeableConcept |
If no HGNC code issued for this gene yet, NCBI gene IDs SHALL be used. Binding: todo ( extensible ) |
|
|
component:gene-expression
|
1..1 | Numerical value for expression | ||
|
code
|
Required Pattern: At least the following | |||
|
coding
|
1..* | Coding |
Code defined by a terminology system Fixed Value: (complex) |
|
|
system
|
1..1 | uri |
Identity of the terminology system Fixed Value: http://loinc.org |
|
|
code
|
1..1 | code |
Symbol in syntax defined by the system Fixed Value: 94820-8 |
|
|
value[x]
|
integer | |||
|
Documentation for this format
|
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