/// url = 
    
    'http://hl7.org/fhir/StructureMap/MolecularSequence5to4B'

    
/// name = 
    
    'MolecularSequence5to4B'

    
/// title = 
    
    'FML Conversion for MolecularSequence: R5 to R4B'

    
/// status = 
    
    'active'


    conceptmap
     "
orientationType    " {

      prefix 
s     = "
    http://hl7.org/fhir/orientation-type
    "

      prefix 
t     = "
http://hl7.org/fhir/4.3/orientation-type    "


  s    :
sense     -
 t    :
sense
  s    :
antisense     -
 t    :
antisense
    }


    conceptmap
     "
sequenceType    " {

      prefix 
s     = "
    http://hl7.org/fhir/sequence-type
    "

      prefix 
t     = "
http://hl7.org/fhir/4.3/sequence-type    "


  s    :
aa     -
 t    :
aa
  s    :
dna     -
 t    :
dna
  s    :
rna     -
 t    :
rna
    }


    conceptmap
     "
strandType    " {

      prefix 
s     = "
    http://hl7.org/fhir/strand-type
    "

      prefix 
t     = "
http://hl7.org/fhir/4.3/strand-type    "


  s    :
watson     -
 t    :
watson
  s    :
crick     -
 t    :
crick
    }


    uses
     "
    http://hl7.org/fhir/StructureDefinition/MolecularSequence
    " 
    alias 
MolecularSequenceR5     as 
    source

    uses
     "
http://hl7.org/fhir/4.3/StructureDefinition/MolecularSequence    " 
    alias 
MolecularSequenceR4B     as 
    target


    imports
     "
http://hl7.org/fhir/StructureMap/*5to4B    "


    group 
MolecularSequence    (
    source
     src
     : 
MolecularSequenceR5,     target
     tgt
     : 
MolecularSequenceR4B    )
     extends 
DomainResource     <<type+>>
     {

  src.identifier    
 ->     
tgt.identifier    ;

  src.type     as 
    v
    
 ->     
tgt.type =     translate
    (
    v
    , 
    '#sequenceType'
    , 
    'code'
    )
    ;

  src.subject    
 ->     
tgt.patient    ;

  src.specimen    
 ->     
tgt.specimen    ;
     // 
    src.focus -> tgt.focus;

  src.device    
 ->     
tgt.device    ;

  src.performer    
 ->     
tgt.performer    ;

  src.relative     as 
    s
    
 ->     
tgt.referenceSeq     as 
    t
     then 
MolecularSequenceReferenceSeq    (
    s
    , 
    t
    )
    ;
     // 
    src.literal -> tgt.literal;

  src.relative     as 
    s
    
 ->     
tgt.variant     as 
    t
     then 
MolecularSequenceVariant    (
    s
    , 
    t
    )
    ;

    }


    group 
MolecularSequenceReferenceSeq    (
    source
     src
,     target
     tgt
    )
     extends 
BackboneElement     {

  src.startingSequence     as 
    s
    
 ->     
    tgt
     then
     {

    s.chromosome     as 
    s
     where 
code = 'LA21254-0'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '1'
    , 
 tcc.display =     'chromosome 1'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21255-7'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '2'
    , 
 tcc.display =     'chromosome 2'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21256-5'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '3'
    , 
 tcc.display =     'chromosome 3'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21257-3'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '4'
    , 
 tcc.display =     'chromosome 4'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21258-1'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '5'
    , 
 tcc.display =     'chromosome 5'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21259-9'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '6'
    , 
 tcc.display =     'chromosome 6'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21260-7'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '7'
    , 
 tcc.display =     'chromosome 7'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21261-5'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '8'
    , 
 tcc.display =     'chromosome 8'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21262-3'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '9'
    , 
 tcc.display =     'chromosome 9'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21263-1'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '10'
    , 
 tcc.display =     'chromosome 10'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21264-9'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '11'
    , 
 tcc.display =     'chromosome 11'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21265-6'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '12'
    , 
 tcc.display =     'chromosome 12'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21266-4'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '13'
    , 
 tcc.display =     'chromosome 13'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21267-2'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '14'
    , 
 tcc.display =     'chromosome 14'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21268-0'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '15'
    , 
 tcc.display =     'chromosome 15'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21269-8'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '16'
    , 
 tcc.display =     'chromosome 16'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21270-6'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '17'
    , 
 tcc.display =     'chromosome 17'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21271-4'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '18'
    , 
 tcc.display =     'chromosome 18'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21272-2'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '19'
    , 
 tcc.display =     'chromosome 19'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21273-0'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '20'
    , 
 tcc.display =     'chromosome 20'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21274-8'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '21'
    , 
 tcc.display =     'chromosome 21'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21275-5'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     '22'
    , 
 tcc.display =     'chromosome 22'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21276-3'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     'X'
    , 
 tcc.display =     'chromosome X'
    ;

    s.chromosome     as 
    s
     where 
code = 'LA21277-1'    
 ->     
 tgt.chromosome =     create
    (
    'CodeableConcept'
    )
     as 
    tc
    , 
 tc.coding =     create
    (
    'Coding'
    )
     as 
    tcc
    , 
 tcc.system =     'http://terminology.hl7.org/CodeSystem/chromosome-human'
    , 
 tcc.code =     'Y'
    , 
 tcc.display =     'chromosome Y'
    ;

    s.sequence     : 
CodeableConcept    
 ->     
tgt.referenceSeqId    ;

    s.sequence     : 
Reference    
 ->     
tgt.referenceSeqPointer    ;

    s.sequence     : 
string    
 ->     
tgt.referenceSeqString    ;

    s.windowStart    
 ->     
tgt.windowStart    ;

    s.windowEnd    
 ->     
tgt.windowEnd    ;

    s.orientation     as 
    v
    
 ->     
tgt.orientation =     translate
    (
    v
    , 
    '#orientationType'
    , 
    'code'
    )
    ;

    s.strand     as 
    v
    
 ->     
tgt.strand =     translate
    (
    v
    , 
    '#strandType'
    , 
    'code'
    )
    ;

      }
    ;

    }


    group 
MolecularSequenceVariant    (
    source
     src
,     target
     tgt
    )
     extends 
BackboneElement     {

  src.edit     as 
    s
    
 ->     
    tgt
     then
     {

    s.start    
 ->     
tgt.start    ;

    s.end    
 ->     
tgt.end    ;

    s.replacementSequence    
 ->     
tgt.observedAllele    ;

    s.replacedSequence    
 ->     
tgt.referenceAllele    ;

      }
    ;

    }