StructureDefinition-annotation-reference

Sourcearkhn.fhir.uv.osiris#current:FHIR Osiris Implementation Guide (v4.0.1)
resourceTypeStructureDefinition
idannotation-reference
canonicalhttps://build.fhir.org/ig/arkhn/arkhn-ig-osiris/StructureDefinition/annotation-reference
version2.1.0
statusdraft
publisherArkhn
nameAnnotationReference
titleAnnotation Reference
date2023-08-28T10:50:04+00:00
descriptionThe annotation reference profile indicates the reference genome / pfam domain / database used to generate the Annotation instance linked.
fhirVersion4.0.1
kindresource
abstractfalse
sdTtypeMolecularSequence
derivationconstraint
basehttp://hl7.org/fhir/StructureDefinition/MolecularSequence
Usages
Name Flags Card. Type Description & Constraints doco
. . MolecularSequence MolecularSequence
. . . coordinateSystem Required Pattern: 0
. . . patient S Reference (Oncology Patient)
. . . referenceSeq
. . . . orientation S DNA strand orientation
. . . . referenceSeqId S 1.. Type of the referenced annotation
Binding: Reference Type Value Set ( extensible )
. . . Slices for repository 1 .. Slice: Unordered, Open by pattern:type
. . . . repository:reference-db 1..1
. . . . . type Required Pattern: other
. . . . . name S 1.. Reference database name
. . . . . datasetId S 1.. Identifier of the annotation in the database
. . . . repository:pfam-domain S 0..1
. . . . . type Required Pattern: directlink
. . . . . url Required Pattern: http://pfam.xfam.org/
. . . . . name Required Pattern: pfam
. . . . . datasetId S Pfam ID
. . . . . readsetId S Pfam domain name

doco Documentation for this format

Produced 08 Sep 2023