CodeSystem-pharmgkb-evidence-level-custom-cs

Sourcehl7.fhir.uv.genomics-reporting#current:Genomics Reporting Implementation Guide (v4.0.1)
resourceTypeCodeSystem
idpharmgkb-evidence-level-custom-cs
canonicalhttp://hl7.org/fhir/uv/genomics-reporting/CodeSystem/pharmgkb-evidence-level-custom-cs
version2.1.0-SNAPSHOT
statusactive
publisherHL7 Clinical Genomics Working Group
namePharmGKBEvidenceLevelCustomCS
titlePharmGKB Evidence Level Example Codes
date2023-07-25T14:43:25+00:00
experimentalfalse
descriptionPharmGKB contains examples of evidence level concepts that are not conflated with clinical significance. These can be found on PharmGKB https://www.pharmgkb.org/page/clinAnnLevels. These examples are informational only, for copyright information contact the relevant source.
jurisdictionsuv
caseSensitivetrue
contentcomplete
Usages

This case-sensitive code system http://hl7.org/fhir/uv/genomics-reporting/CodeSystem/pharmgkb-evidence-level-custom-cs defines the following codes:

Code Display Definition
1A PGKB 1A High level of evidence. Supported by a guideline or FDA label with variant specific prescribing guidance. Additionally, supported by at least one publication.
1B PGKB 1B High level of evidence. But, NOT supported by a guideline or FDA label with variant specific prescribing guidance. Additionally, supported by at least one publication.
2A PGKB 2A Moderate level of evidence. Supported by being a KNOWN pharmacogene on https://www.pharmgkb.org/vips. Also, found in multiple studies but may have a minority of studies that did not support the majority opinion. Supported by at least two indpendent publications.
2B PGKB 2B Moderate level of evidence. NOT in the list of very important, KNOWN pharmacogenes. Found in multiple studies but may have a minority of studies that did not support the majority opinion. Supported by at least two indpendent publications.
3 PGKB 3 Low-level of evidence. Where either the assocation is based on a single study, failed to be reproduced, or preliminary evidence.
4 PGKB 4 The evidence does not support an association between the variant and the drug phenotype. (negative)

Produced 08 Sep 2023