Cross-Version Extension for Sequence.variant in R3

Context of Use

This extension may be used in the following contexts:

• element MolecularSequence (For version R5)
• extension http://hl7.org/fhir/5.0/StructureDefinition/extension-MolecularSequence
• element Basic (For version R2)

Name	Flags	Card.	Type	Description & Constraints
Extension		0..*	Extension	Variant in sequence
extension:cigarR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.cigar]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.cigar
extension:endR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.end]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.end
extension:observedAlleleR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.observedAllele]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.observedAllele
extension:referenceAlleleR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.referenceAllele]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.referenceAllele
extension:startR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.start]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.start
extension:variantPointerR3			?gen-e1? [CanonicalType[http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.variantPointer]]	URL: http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.variantPointer
extension		1..
value[x]		..0
url				"http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant"
Documentation for this format

{
  "resourceType" : "StructureDefinition",
  "id" : "xv-r3-seq.variant",
  "url" : "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant",
  "name" : "XVerExtensionSequence.variantR3",
  "title" : "Cross-Version Extension for Sequence.variant in R3",
  "status" : "active",
  "experimental" : false,
  "publisher" : "Health Level Seven International (Clinical Genomics)",
  "contact" : [{
    "telecom" : [{
      "system" : "url",
      "value" : "http://hl7.org/fhir"
    }]
  },
  {
    "telecom" : [{
      "system" : "url",
      "value" : "http://www.hl7.org/Special/committees/clingenomics/index.cfm"
    }]
  }],
  "description" : "Cross-Version Extension for Sequence.variant. Valid in versions R2, R5\r\n\r\nThis is a valid cross-version extension because it's counted as a new element",
  "jurisdiction" : [{
    "coding" : [{
      "system" : "http://unstats.un.org/unsd/methods/m49/m49.htm",
      "code" : "001"
    }]
  }],
  "fhirVersion" : "5.0.0",
  "kind" : "complex-type",
  "abstract" : false,
  "context" : [{
    "extension" : [{
      "extension" : [{
        "url" : "startFhirVersion",
        "valueCode" : "5.0"
      },
      {
        "url" : "endFhirVersion",
        "valueCode" : "5.0"
      }],
      "url" : "http://hl7.org/fhir/StructureDefinition/version-specific-use"
    }],
    "type" : "element",
    "expression" : "MolecularSequence"
  },
  {
    "type" : "extension",
    "expression" : "http://hl7.org/fhir/5.0/StructureDefinition/extension-MolecularSequence"
  },
  {
    "extension" : [{
      "extension" : [{
        "url" : "startFhirVersion",
        "valueCode" : "1.0"
      },
      {
        "url" : "endFhirVersion",
        "valueCode" : "1.0"
      }],
      "url" : "http://hl7.org/fhir/StructureDefinition/version-specific-use"
    }],
    "type" : "element",
    "expression" : "Basic"
  }],
  "type" : "Extension",
  "baseDefinition" : "http://hl7.org/fhir/StructureDefinition/Extension",
  "derivation" : "constraint",
  "differential" : {
    "element" : [{
      "path" : "Extension",
      "short" : "Variant in sequence",
      "definition" : "The definition of variant here originates from Sequence ontology ([variant_of](http://www.sequenceontology.org/browser/current_svn/term/variant_of)). This element can represent amino acid or nucleic sequence change(including insertion,deletion,SNP,etc.)  It can represent some complex mutation or segment variation with the assist of CIGAR string.",
      "min" : 0,
      "max" : "*",
      "isModifier" : false
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "cigarR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.cigar"]
      }]
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "endR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.end"]
      }]
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "observedAlleleR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.observedAllele"]
      }]
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "referenceAlleleR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.referenceAllele"]
      }]
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "startR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.start"]
      }]
    },
    {
      "path" : "Extension.extension",
      "sliceName" : "variantPointerR3",
      "type" : [{
        "code" : "Extension",
        "profile" : ["http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant.variantPointer"]
      }]
    },
    {
      "path" : "Extension.extension",
      "min" : 1
    },
    {
      "path" : "Extension.value[x]",
      "max" : "0"
    },
    {
      "path" : "Extension.url",
      "fixedUri" : "http://hl7.org/fhir/3.0/StructureDefinition/extension-Sequence.variant"
    }]
  }
}